Utilization

There is 2 ways to use PBxplore:
  • command-line scripts
  • API

Command-line scripts

PBxplore is bundle with a suite of command-line tools. Once installed, they should be available in your $PATH. Here the list:

  • PBassign assign Protein Blocks (PBs) from a set of protein structures.
  • PBcount computes the frequency of PBs at each position along the amino acid sequence.
  • PBstat generates frequency and logo plots, and estimates the Neq.

API

PBxplore is also a python library and provides an API to interfacing with Python applications. You will find here a list of notebooks to help you use the API.